fptools¶
Tools for Fiber Photometry Analysis¶
Codes/Notebooks to analyze Fiber Photometry and behavioral data
See also related package for analyzing event data from TDT and MedAssociate systems: med-associates-utils The med-associates-utils package functionality has now largely been incorporated into fptools.
About¶
This package allows you to load fiber photometry and behavioral data, with first-class support for data produced by TDT Synapse software and Med-Associates systems. The package eases working with the resulting data via a unified interface. Also includes a growing library of analysis routines.
Features¶
- built-in support for TDT tanks and Med-Associates files
- interfaces to customize loading of arbitrary data
- metadata management and propagation
- powerful visualizations with only a few lines of code
- more being added with time
Installation¶
We recommend you use anaconda virtual environments.
There are two main ways to install this package. The first, create the virtual environment, and install this package directly (more useful on "production" systems). The second, clone the repository, and then pass to anaconda the environment.yaml file during environment creation (more useful for development).
git clone https://github.com/tischfieldlab/fptools.git
cd fptools
conda env create -f environment.yml
Support¶
For technical inquiries specific to this package, please open an Issue with a description of your problem or request.
For general usage, see the main website.
Other questions? Reach out to thackray@rutgers.edu.